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structure nameASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE
(PROTEIN BACTERIOPHAGE P1 CRE GENE)
referenceVan Duyne et al.
sourceEnterobacteria phage P1
experimentX-ray (resolution=2.70, R-factor=0.227)
structural superfamilylambda integrase-like, N-terminal domain;DNA breaking-rejoining enzymes;
sequence familyPhage integrase family;
multimeric complexes1kbu_AB 1ma7_AB 1nzb_AB 1ouq_AB 1ouq_EF 1pvp_AB 1pvq_AB 1pvr_AB 1q3v_AB 1q3v_EF 1xo0_AB 2hof_AB 2hoi_GH 3c28_AB 3c29_AB 3mgv_AB 3mgv_CD 4crx_AB 5crx_AB 7rhx_AB 7rhz_AB
reference complex7rhx_G
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHTMSKTQQKRRKSRER

Estimated binding specificities ?

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# IC=10.310 IC/col=0.793 n_of_columns=13 specificity:   
A |   0  75  24  24  24   6   0   0   6  82   0  96   0
C |   7   6  24  24  24   6  96   0   6   2   0   0   0
G |   0   9  24  24  24   6   0  96   6   6   0   0  90
T |  89   6  24  24  24  78   0   0  78   6  96   0   6
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updated Mon Dec 18 12:25:27 2023