1q3v_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A WILD-TYPE CRE RECOMBINASE-LOXP SYNAPSE: PHOSPHOTYROSINE COVALENT INTERMEDIATE
reference	Meyer et al. 'Nucleic 31 5449 2003
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.91, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1q3v_A interface=31,32,35,38,77,78,81,85,232,234,235,248,250,253,273,308, nlpalpvdatsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled > 1q3v_B interface=21,22,24,25,28,67,68,71,75,182,222,224,225,238,240,243,263,298,300,301, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNIvmnyirnldsetgamvrlled
interface signature	HTMSKTQQRRKSRERN/HTKMSKTQQKRRKSRERNNI

Estimated binding specificities ?

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# IC=23.504 IC/col=0.839 n_of_columns=28

specificity:

A |   6   0   0   6  96   0  89   0  24  24   3  96  24  24  68   1  92   0  96   0   0  81  24  24  24   3  89   1
C |   4  96   0   3   0   0   0   0  24  24   3   0  24  24   6   3   1   0   0  96   0   6  24  24  24   3   0   6
G |   3   0  96   7   0   0   6  96  24  24   4   0  24  24  19   0   0   0   0   0  96   6  24  24  24   4   4   0
T |  83   0   0  80   0  96   1   0  24  24  86   0  24  24   3  92   3  96   0   0   0   3  24  24  24  86   3  89

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updated Fri Dec 15 10:46:30 2023