3mgv_AB : 3D-footprint complex

structure name	CRE RECOMBINASE-DNA TRANSITION STATE
reference	Van Duyne et al. 'Nucleic 38 5817 2010
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.29, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mgv_A interface=21,22,24,25,28,67,68,71,75,222,224,225,238,240,241,243,263,301, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRAlEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirnldsetgamvrlled > 3mgv_B interface=21,22,24,25,28,67,68,71,75,182,222,224,225,238,240,243,263,298, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled
interface signature	HTKMSKTQQRRKSRAERI/HTKMSKTQQKRRKSRERN

Estimated binding specificities ?

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# IC=28.739 IC/col=0.845 n_of_columns=34

specificity:

A |  93   0  93  24  24  24   2   0   0   0  96   0  96   2  24  24  10  24  24   5   0   0  96   0  96   0   0  90  74  24  24   2  94   4
C |   0   3   1  24  24  24   2  96   0   0   0   0   0   4  24  24   5  24  24   5  96   0   0   0   0  96   0   2   7  24  24   2   0   8
G |   3   0   2  24  24  24   4   0  96   0   0   0   0  85  24  24   5  24  24  74   0   0   0   0   0   0  96   2  10  24  24   4   2   2
T |   0  93   0  24  24  24  88   0   0  96   0  96   0   5  24  24  76  24  24  12   0  96   0  96   0   0   0   2   5  24  24  88   0  82

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updated Fri Dec 15 16:04:14 2023