1pvr_AB : 3D-footprint complex

structure name	BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE LOXP (WILDTYPE) RECOGNITION SITE
reference	Baldwin et al.
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pvr_A interface= atsdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaapsatsqlsnsalggifgathrliygakddsgqrylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled > 1pvr_B interface=22,23,25,26,29,68,69,72,76,183,223,225,226,239,241,264,302, tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirnltgamvrlled
interface signature	/HTKMSKTQQKRRKSSRI

Estimated binding specificities ?

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# IC=9.036 IC/col=0.695 n_of_columns=13

specificity:

A |   8  87  24  24  24   0   8  24   0  96   0  78  87
C |  11   0  24  24  24   0  69  24   0   0   0   2   0
G |   8   9  24  24  24   0   8  24   0   0   0   8   8
T |  69   0  24  24  24  96  11  24  96   0  96   8   1

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updated Fri Dec 15 10:44:40 2023