1pvp_AB : 3D-footprint complex

structure name	BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, ALSHG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7
reference	Baldwin et al.
source	Escherichia phage P1
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pvp_A interface= tsdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllraaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaapsatsqlslsalhgifgathrliygakddsgqrylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled > 1pvp_B interface=22,23,25,26,29,68,69,72,76,183,223,225,226,239,241,244,264,299, tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllraaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSlSalHgifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirtgamvrlled
interface signature	/HTKMSKTQQKRRKSSHRN

Estimated binding specificities ?

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# IC=9.900 IC/col=0.762 n_of_columns=13

specificity:

A |   5  96  24  24   5   5  24  67   0  96   0  84  90
C |   5   0  24  24   5  73  24   5   0   0   0   0   0
G |   5   0  24  24   7   5  24  11   0   0   0  11   6
T |  81   0  24  24  79  13  24  13  96   0  96   1   0

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updated Fri Dec 15 10:44:04 2023