5crx_AB : 3D-footprint complex

structure name	ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE
reference	Van Duyne et al.
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5crx_A interface=22,23,26,29,68,69,72,76,114,207,209,210,223,225,228,248, tsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdageraKqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtrnldsetgamvrlle > 5crx_B interface=22,23,26,29,68,69,72,183,223,225,226,239,241,244,264, tsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqagg
interface signature	HTMSKTQQKRRKSRER/HTMSKTQKRRKSRER

Estimated binding specificities ?

readout + contact

# IC=22.959 IC/col=0.717 n_of_columns=32

specificity:

A |   0  84  24  24  24   3   0   0   6  86   0  96   0  24  24  24  24  24  24   0   0  96   5  96   3   0  84  24  24  24   3  96
C |   3   3  24  24  24   3  96   0   3   0   0   0   0  24  24  24  24  24  24  96   0   0   3   0  84   0   3  24  24  24   3   0
G |   1   6  24  24  24   3   0  96   3   7   0   0  92  24  24  24  24  24  24   0   0   0   0   0   6  96   3  24  24  24   3   0
T |  92   3  24  24  24  87   0   0  84   3  96   0   4  24  24  24  24  24  24   0  96   0  88   0   3   0   6  24  24  24  87   0

scan!

home
updated Sat Dec 16 00:22:12 2023