3mgv_CD : 3D-footprint complex

structure name	CRE RECOMBINASE-DNA TRANSITION STATE
reference	Van Duyne et al. 'Nucleic 38 5817 2010
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.29, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mgv_C interface=21,22,24,25,28,67,68,71,75,182,222,224,225,238,240,243,263,301, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirnldsetgamvrlled > 3mgv_D interface=21,22,24,25,28,67,68,71,75,182,222,224,225,238,240,243,263,298, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled
interface signature	HTKMSKTQQKRRKSRERI/HTKMSKTQQKRRKSRERN

Estimated binding specificities ?

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# IC=28.804 IC/col=0.847 n_of_columns=34

specificity:

A |  90   0  94  24  24  24   2   0   0   0  96   0  93   0   8  24  24  65   5  24   0   0  96   0  96   0   0  84  24  24  24   2  96   0
C |   0   0   0  24  24  24   5  96   0   0   0   0   1   0  74  24  24   5  21  24  96   0   0   0   0  96   0   2  24  24  24   4   0   8
G |   5   0   2  24  24  24   2   0  96   0   0   0   2  96   9  24  24  16   2  24   0   0   0   0   0   0  96   5  24  24  24   5   0   1
T |   1  96   0  24  24  24  87   0   0  96   0  96   0   0   5  24  24  10  68  24   0  96   0  96   0   0   0   5  24  24  24  85   0  87

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updated Fri Dec 15 16:04:54 2023