1pvq_AB : 3D-footprint complex

structure name	BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7
reference	Baldwin et al.
source	Escherichia phage P1
experiment	X-ray (resolution=2.75, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pvq_A interface= tsdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaapsatsqlsnsalggifgathrliygakddsgqrylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled > 1pvq_B interface=22,23,25,26,29,68,69,72,76,183,223,225,226,239,241,264,302, tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirntgamvrlled
interface signature	/HTKMSKTQQKRRKSSRI

Estimated binding specificities ?

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# IC=8.736 IC/col=0.624 n_of_columns=14

specificity:

A |  78   6   6  24  24  24   6  24  24   0  96   0  96  90
C |   6   6   6  24  24  24  78  24  24   6   0   0   0   0
G |   6   6  78  24  24  24   6  24  24   6   0   0   0   6
T |   6  78   6  24  24  24   6  24  24  84   0  96   0   0

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updated Fri Dec 15 10:44:22 2023