2hoi_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TETRAMERIC PRE-CLEAVAGE SYNAPTIC COMPLEX IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION
reference	Van Duyne et al. J.Biol.Chem. 282 24004 2007
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hoi_G interface=21,22,24,25,28,67,68,71,75,222,225,238,240,243,263,298,301, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtatlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnIvmnyirnldsetgamvrlled > 2hoi_H interface=21,22,25,28,67,68,71,75,222,224,225,238,240,241,243,263,298,300, sdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtatlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRAlEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled
interface signature	HTKMSKTQQRKSRERNI/HTMSKTQQRRKSRAERNN

Estimated binding specificities ?

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# IC=28.588 IC/col=0.866 n_of_columns=33

specificity:

A |  80   1  88  24  24   9   2   0   0   0  96   0  96   0   7  24   1  24  24  96   0   0  96   0  96   0   0  88  24  24  24   8  88
C |   2   2   2  24  24   7   4  96   0   0   0   0   0   0   9  24   0  24  24   0  88   0   0   0   0  96   0   2  24  24  24   5   2
G |  10   0   2  24  24   5   2   0  96   0   0   0   0  96   5  24   2  24  24   0   1   0   0   0   0   0  96   4  24  24  24  10   4
T |   4  93   4  24  24  75  88   0   0  96   0  96   0   0  75  24  93  24  24   0   7  96   0  96   0   0   0   2  24  24  24  73   2

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updated Fri Dec 15 12:00:30 2023