2hof_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE PRE-CLEAVAGE SYNAPTIC COMPLEX IN THE CRE- LOXP SITE-SPECIFIC RECOMBINATION
reference	Van Duyne et al. J.Biol.Chem. 282 24004 2007
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hof_A interface=21,22,24,25,28,67,68,71,75,209,211,212,225,227,230,250,288, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihikalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirnldsetgamvrlled > 2hof_B interface=21,22,24,25,28,67,68,70,71,75,222,224,225,238,240,243,263,298, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiQQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtatlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnamvrlled
interface signature	HTKMSKTQQRRKSRERI/HTKMSKTQQQRRKSRERN

Estimated binding specificities ?

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# IC=25.617 IC/col=0.753 n_of_columns=34

specificity:

A |  93   0  68  24  24  24   2   0   0   0  96   0  96  66  24  24  24  24  24  13   0   0  96   0  96   0   0  82  24  24  24   6  86   6
C |   1   2   9  24  24  24   3  96   0   0   0   0   0   2  24  24  24  24  24   4  96   0   0   0   0  96   0   4  24  24  24   4   2   6
G |   2   1   8  24  24  24   2   0  96   0   0   0   0  22  24  24  24  24  24  70   0   0   0   0   0   0  96   4  24  24  24   2   6   2
T |   0  93  11  24  24  24  89   0   0  96   0  96   0   6  24  24  24  24  24   9   0  96   0  96   0   0   0   6  24  24  24  84   2  82

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updated Fri Dec 15 11:59:54 2023