| structure name | HIGH RESOLUTION STRUCTURE OF THE HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP SITE-SPECIFIC RECOMBINATION (Recombinase CRE) |
| reference | Van Duyne et al. J.Biol.Chem. 280 8290 2005 |
| source | Enterobacteria phage P1 |
| experiment | X-ray (resolution=2.00, R-factor=?) |
| structural superfamily | DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain; |
| sequence family | Phage integrase family; |
| multimeric complexes | 1kbu_AB 1ma7_AB 1nzb_AB 1ouq_AB 1ouq_EF 1pvp_AB 1pvq_AB 1pvr_AB 1q3v_AB 1q3v_EF 1xo0_AB 2hof_AB 2hoi_GH 3c28_AB 3c29_AB 3mgv_AB 3mgv_CD 4crx_AB 5crx_AB 7rhx_AB 7rhz_AB |
| redundant complexes | 1nzb 3c29 2hoi 1q3u 1crx 4crx 1kbu 3crx 1pvp 1pvr 2crx 3c28 1drg 1xns 1pvq 2hof 1f44 5crx 1ma7 |
| reference complex | 7rhx_G |
| links to other resources | NAKB  PDIdb DNAproDB |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: CRE | ||
| ATGACGTCAT | PubMed | 4crx_AB(7.95e-03) |
| CTATACGAAC | PubMed | 1kbu_AB(1.67e-04), 1ma7_AB(1.48e-04), 1nzb_AB(1.42e-05), ... (total=25) |
| TATAAATA | PubMed | 1pvp_AB(8.64e-03), 1xo0_AB(8.51e-03), 1kbu_B(1.06e-02), ... (total=7) |
Dendrogram of similar interfaces ?
matrix format------MA--ST----KGTTQT----------RCKT--STRT--------RA-------- L +-----------1xo0_A +-------2 --KGTANAYA------------------KA------------STRG------STTT--QT ! ! +----------1z19_B +------3 +-1 KTKATTAAYCHTWTHTKGTTLTNC--RG--------HTNCTCQGKG-------------- L ! ! +----------2a3v_B ! ! ------------------------------KA----------RG--NAKA---------- --5 +-------------------1p4e_A ! ----------------------------KARG--------------------DG--TGHA L ! +------------------------2v6e_B +-4 --------------------RG--YG---------------------------------- +------------------------1qbj_A |
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updated Mon Dec 18 06:17:21 2023