structure name | CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH I- CREI TARGET (C1221) IN THE PRESENCE OF 2 MM MG REVEALING DNA CLEAVED (DNA ENDONUCLEASE I-CVUI) |
reference | LopezMendez et al. J.Biol.Chem. 290 28727 2015 |
source | CHLORELLA VULGARIS |
experiment | X-ray (resolution=2.50, R-factor=0.204) |
structural superfamily | Homing endonucleases; |
sequence family | LAGLIDADG endonuclease; |
multimeric complexes | 5a72_AB 5a74_AB 5a77_AB 5a78_AB |
redundant complexes | 5a72 5a78 5a74 |
reference complex | 5a74_B |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | CQVRDYRFRRNDMEK |
Estimated binding specificities ?
readout + contact |
A | 0 58 96 34 96 6 0 0 0 6 6 75 C | 96 3 0 3 0 89 0 0 96 9 6 9 G | 0 3 0 1 0 0 96 7 0 75 9 6 T | 0 32 0 58 0 1 0 89 0 6 75 6scan! |
Dendrogram of similar interfaces ?
matrix formatCA--QGVT--RT--DCYA------RT----FA----------RG--RGNTDTMCEA------KA-- L +5a77_B +------6 SAYCLCIT--RGDCYA----QG--------IG----NA--RG----RG--DTIC--RG-------- L ! ! +2fld_B ! +-1 SAYCKTITPTRGDCYA--------------IG----NA--RG----RT--DTICDG--IA------ L ! +3fd2_A +-------11 SGIGQAKG--NC--SC----RG--QG--DGTA------YC----AT--SC--VCKGRG----TT-- L ! ! +6fb0_A ! ! +-2 STITQANG--NT--SC----RG--RG--YCTC----------RG--------VCQT------TT-- L ! +-----9 +2xe0_A ! ! STITQA--------ST----RG--RG--YCTC------YC--RG----SG--VAQT------TC-- L ! +3mxa_A +--------13 SANCSCKG--LT------------DAECNATG----------RC--------------DAQA--QC L ! ! +-----------2ex5_A ! ! ! ST--NAVT--HG--TCNA--AT--LCYCECAT----------YG----SADCTCKTKGSA------ L ! ! ! +4lq0_A ! ! ! ! SALTRGRG--NT--KT----ST--EC--QGTAHAKA----------ST--------KGTC------ L ! ! ! +-7 +6uwj_A ! +--12 ! ! +-3 SA--RGRG--NT--KTST--ST--EC--QGTA--------------ST----AT--KG-------- L ! ! ! +-4 +6bd0_A -14 ! +-8 ! STIGRGRG--------MC--LT--EC--STKG----------TT--NA------MGRTSC------ L ! ! ! ! +5t2n_A ! ! ! ! STMG----------KGYC--RT----RGVTSA----------FC--MC----STQTRGEC------ L ! +--------10 ! +5esp_A ! ! +-5 --MGTASG--------RA--ST--RGRGRG----------------------DTRGRCEC------ L ! ! +6bce_A ! ! CGRGST------------KARG--QTFAQGNG----------HC--SC----LAQGRGQA------ L ! +-4yit_A ! --YT----------------RGSGECRGVTTG----------QG--------RTEARGSC------ L +-------------------------2vs7_A |
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updated Mon Dec 18 11:50:49 2023