5esp_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LAGLIDADG MEGANUCLEASE I-PANMI WITH COORDINATED CALCIUM IONS (I-PANMI)
reference	Hallinan et al. Structure 24 862 2016
source	PODOSPORA ANSERINA
experiment	X-ray (resolution=3.00, R-factor=0.230)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5esp_A interface=16,18,26,27,32,36,38,40,62,64,68,70,72,74,173,175,177,179,181,183,184,189,191,195,197,219,221,223,225,229,231, klnpsyisgfvdgegSfMltiikdnKYklgwRvvcRfViSlhkkdlsllnkikeffdvgnvFlMtkdSaQyRvEslkgldliinhfdkyplitkkqadyklfkmahnliknkshltkegllelvaikavinnglnndlsiafpgintilrpdtslpqilnpfwlsgfvdaegCfSvVvFkSkTSklgeAvKlsfIlTqsnrdeylikslieylgcgntSlDpRgTidfKvTnfssikdiivpffikyplkgnknldftdfcevvrlmenkshltkegldqikkirnrmntnr
interface signature	SMKYRRVSFMSQRECSVFSTSAKITSDRTKT

Estimated binding specificities ?

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# IC=21.545 IC/col=1.026 n_of_columns=21

specificity:

A |   7   0   3   0   0   0  96   0  84  24  24   0   0   0   7  96   3   0  96  76   3
C |  76   0  87  96   0  96   0   0   6  24  24  96  96   0   6   0   6  96   0   7   3
G |  10   0   3   0   0   0   0   0   3  24  24   0   0   0   7   0   3   0   0  10  87
T |   3  96   3   0  96   0   0  96   3  24  24   0   0  96  76   0  84   0   0   3   3

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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 10:19:07 2023