6bce_A : 3D-footprint complex

structure name	WILD-TYPE I-LTRI BOUND TO COGNATE SUBSTRATE (PRE-CLEAVAGE COMPLEX) (Ribosomal protein 3homing endonuclease-like fusion protein)
reference	McMurrough et al. 'Nucleic 46 11990 2018
source	Leptographium truncatum
experiment	X-ray (resolution=1.75, R-factor=0.202)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
multimeric complexes	6bch_AD 6bch_HL 6bcn_AC
redundant complexes	3r7p_A 6bcf_J 6bcg_A 6bch_H 6bci_A 6bcn_A 6bct_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6bce_A interface=18,20,22,27,32,34,36,38,66,68,70,72,171,173,175,177,179,181,182,187,189,193,195,217,219,221,227,286, nispwtitgfadaessfMlTvSkdskRntgwSvRpRfRiglhnkdvtilksireylgagiitsdiDaRiRfEslkelevvinhfdkyplitqkradyllfkkafyliknkehlteeglnqiltlkaslnlglseelkeafpntipaerllvtgqeipdsnwvagftagegSfYiRiAkNsTLktgyQvQsvfQiTqdtrdielmknlisylncgniRiRtCvdlvvTnlndikekiipffnknhiigvklqdyrdwckvvtlidnkehltseglekiqkikegmnRgrs
interface signature	MTSRSRRRDRRESYRANTLQQQTRRCTR

Estimated binding specificities ?

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# IC=19.740 IC/col=0.987 n_of_columns=20

specificity:

A |   0   0   0   1   0   0  24  69  24  24   0   0  96   0   0   0   0   0  78  11
C |   0   0  96   8  96  96  24  11  24  24  96   0   0  96   0   0   0   0   8   8
G |   0  96   0   0   0   0  24   8  24  24   0  96   0   0  87   0   0   0   0  69
T |  96   0   0  87   0   0  24   8  24  24   0   0   0   0   9  96  96  96  10   8

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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 12:16:52 2023