interface graph thumbnail
legend  pdf

structure nameGROUP I INTRON-ENCODED HOMING ENDONUCLEASE I-CEUI COMPLEXED WITH DNA
(DNA endonuclease I-CeuI)
referenceStoddard et al. Structure 14 869 2006
sourceChlamydomonas eugametos
experimentX-ray (resolution=2.20, R-factor=0.219)
structural superfamilyHoming endonucleases;
sequence familyLAGLIDADG endonuclease;
multimeric complexes2ex5_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSNSKLDENTRKSDQQN

Estimated binding specificities ?

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# IC=11.204 IC/col=1.019 n_of_columns=11 specificity:   
A |   5  73   0   0  96   0   0   0   5   5  90
C |   5   7   5   0   0  96  96   0   5  11   5
G |   7  11   5  96   0   0   0  96   5  67   1
T |  79   5  86   0   0   0   0   0  81  13   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 06:26:27 2023