4lq0_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE I-LTRWI LAGLIDADG HOMING ENDONUCLEASE BOUND TO TARGET DNA. (LAGLIDADG homing endonuclease)
reference	Stoddard et al. 'To ? ? ?
source	Leptographium truncatum
experiment	X-ray (resolution=2.68, R-factor=0.200)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lq0_A interface=18,22,24,26,28,29,34,36,38,40,42,65,67,69,70,72,74,76,78,177,179,181,183,185,187,188,193,195,199,201,221,223,225,230,232,236, nieylnwyicglvdaegSfgvNvVkHaTNktgyAvLtYfElAmnskdkqllelikktfdlecniYhNpSDdTlKfKvSnieqivnkiipffekytlfsqkrgdfilfckvveliknkehltlnglmkilsikaamnlglsenlkkefpgclsvkrpefglsnlnkrwlagfiegeaCfFvSiYnSpKSklgkAvQlvfKiTqhirdkiliesivellncgRvEvRksneAcDftvTsikeienyiipffneypligqklknyedfklifdmmktkdhlteeglskiieiknkmntnri
interface signature	SNVHTNALYEAYNSDTKKSCFSYSKSAQKTRERADT

Estimated binding specificities ?

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# IC=22.094 IC/col=0.961 n_of_columns=23

specificity:

A |   8  24   0  10  79   3   0   0  96  96   0  24  24   0   0   0   0  67  12   0   0  96  90
C |  64  24   0   8  13   0   0   0   0   0   0  24  24   0   0   0   0  10   8   0   0   0   2
G |  11  24  96   5   2  93   0  96   0   0  96  24  24   0  96   0   0   8  14   0   0   0   2
T |  13  24   0  73   2   0  96   0   0   0   0  24  24  96   0  96  96  11  62  96  96   0   2

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 09:06:31 2023