structure name | THE CRYSTAL STRUCTURE OF I-LTRI (Ribosomal protein 3homing endonuclease-like fusion protein) |
reference | Stoddard et al. Proc.Natl.Acad.Sci.USA 108 13077 2011 |
source | Leptographium truncatum |
experiment | X-ray (resolution=2.70, R-factor=0.196) |
structural superfamily | Homing endonucleases; |
sequence family | LAGLIDADG endonuclease; |
multimeric complexes | 6bch_AD 6bch_HL 6bcn_AC |
reference complex | 6bce_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | SMTSRRRRDRRESYRANTLQQQTRRCT |
Estimated binding specificities ?
readout + contact |
A | 70 12 0 0 0 4 0 0 24 83 24 24 0 0 96 0 1 0 0 8 96 8 91 C | 10 4 0 0 96 1 96 96 24 4 24 24 96 0 0 96 0 0 0 9 0 10 4 G | 8 75 0 96 0 0 0 0 24 5 24 24 0 96 0 0 91 0 0 0 0 66 0 T | 8 5 96 0 0 91 0 0 24 4 24 24 0 0 0 0 4 96 96 79 0 12 1scan! |
Dendrogram of similar interfaces ?
matrix formatSGMGRGRG------KTYA--LTVT----TT----SC--------RGEC--SAKGIG--KT----SGITQAIA--QA--TC------EC--RG--WTYC----TC-- L +4lox_A +-3 ST--NAVT--HG--TCNA--ATLCYCECAT--YG--NA--TCKTKGSA--CTFTST--YA--STKTSTATQA--KT--TG--RA--ET------ATDT----TA-- L +-5 +4lq0_A ! ! STMG----------KGYC--RT--RGVTSAFC--MC----STQTRGEC--CTSTVA--FT--STTCSCATKA--IT--TC------STDA--RGTC--KT--TG-- L ! +5esp_A +-8 ------RA--RG------RTRGSTRTQGTA----SC----ATMCRGTC--HC--NA--KT--------YA--RG----SA--RT--KG--KG--WTECET--TT-- L ! ! +5t2h_A ! ! +-4 SCMCRG--RG----------YTST--ECTT----RG----TTRG----WTTTYTHG------------YCRGRGIT--------QC--------MCHT----TGKT L +-------9 +-6 +5thg_A ! ! ! STIGRGRG--------MC--LTEC--STKG------------MGRTSCWGHT--NC--WC--RG------QG------ST--LA--KG--RG--WC--RG--TG-- L ! ! +5t2n_A +-----11 ! CGRG--------------KARGQTFAQGNG----SC----LAQGRGQA--CCMT----AC--STAT--QAYA--IC--TA--RT------KGRTVAEC--QT---- L ! ! +-4yit_A ! ! YCSTTC--------------YCTGET--EC----RG----MA--RGRG--CCST--YG--LTNT----ITST----DT--AT----YA----TTCCRTKT--TA-- L ! +---------3uvf_B ! STITQAKG--RG--STNT--QTST--ATTC----YTSC--VCDTRGST---------------------------------------------------------- L +------12 +3mxb_B ! ! +-1 SGIGQAKG--NC--SC----RGQG--DGTAYC--ATSC--VCKGRG------------------------------------------------------------ L ! ! +-2 +6fb0_A ! ! ! ! SGIGQAKG------SC----KG----KGTA----YCST--VG--YA------------------------------------------------------------ L ! ! +-----7 +6fb0_B -13 ! ! ! SAYCLCIT--RGDCYA----QG------IG----RG--DTIC--RG------------------------------------------------------------ L ! +--------10 +2fld_B ! ! --------------------------------------------------SANCSC--KG--LT------DAECNA--TG------RC--------------DAQA L ! +------2ex5_A ! ----------------------------------------------------------DT------------------------------NC-------------- L +------------------------3c0w_A |
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updated Mon Dec 18 08:54:06 2023