6bcf_J : 3D-footprint complex

structure name	I-LTRI G183A BOUND TO COGNATE SUBSTRATE (PRE-CLEAVAGE COMPLEX) (Ribosomal protein 3homing endonuclease-like fusion protein)
reference	McMurrough et al. 'Nucleic 46 11990 2018
source	Leptographium truncatum
experiment	X-ray (resolution=2.92, R-factor=0.242)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
multimeric complexes	6bch_AD 6bch_HL 6bcn_AC
reference complex	6bce_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6bcf_J interface=18,22,27,34,36,38,66,68,70,72,173,175,177,179,181,182,187,189,193,195,217,221,227, nispwtitgfadaessfMltvSkdskRntgwsvRpRfRiglhnkdvtilksireylgagiitsdiDaRiRfEslkelevvinhfdkyplitqkradyllfkkafyliknkehlteeglnqiltlkaslnlglseelkeafpntipaerllvtgqeipdsnwvagftaaegsfYiRiAkNsTLktgyQvQsvfQiTqdtrdielmknlisylncgniRirtCvdlvvTnlndikekiipffnknhiigvklqdyrdwckvvtlidnkehltseglekiqkikegmnrgrs
interface signature	MSRRRRDRREYRANTLQQQTRCT

Estimated binding specificities ?

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# IC=16.099 IC/col=0.805 n_of_columns=20

specificity:

A |   0   0   0   3   0   0  24  24  24  24   6  24  76   3   3   0  11   0  96   6
C |   0   0  96   3  96  92  24  24  24  24  76  24   3   3   3   0   3   0   0   3
G |   3  96   0   6   0   3  24  24  24  24  11  24   6   2  87   0   2   0   0  84
T |  93   0   0  84   0   1  24  24  24  24   3  24  11  88   3  96  80  96   0   3

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updated Mon Dec 18 14:30:09 2023