| structure name | ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX (PROTEIN ENGRAILED HOMEODOMAIN Q50K) |
| reference | Tucker-Kellogg et al. Structure 5 1047 1997 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=1.90, R-factor=0.205) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 2hdd_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RKIKN |
Estimated binding specificities ?
| readout + contact |  |
A | 8 0 96 96 14 0 8 61 C | 0 0 0 0 14 96 81 14 G | 81 0 0 0 9 0 0 7 T | 7 96 0 0 59 0 7 14scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ENGRAILED | ||
| TAATTA | PubMed | 2hdd_A(3.37e-03), 1hdd_CD(1.68e-04), 3hdd_AB(7.09e-04), ... (total=5) |
| TAATCC | PubMed | 2hdd_A(8.29e-10), 2hdd_AB(8.67e-08), 3hdd_A(3.43e-03), ... (total=4) |
| TTAATT | PubMed | 2hdd_A(3.37e-03), 3hdd_A(3.43e-03), 1hdd_C(3.41e-03) |
| TAATNN | PubMed | 2hdd_A(3.37e-03), 3hdd_A(3.43e-03), 1hdd_C(3.41e-03) |
| TTAATTGCAT | PubMed | 3hdd_AB(9.75e-03), 3hdd_A(7.13e-03) |
Dendrogram of similar interfaces ?
matrix format--------------YTVC--KGDC--KC-------- L +-----------------------2qhb_A ! --------------STVC--KGDC--RG-------- L +-15 +--1w0t_A ! ! +------------6 ------------------NTTCTA------------ L ! +------11 +--5zux_A ! ! --MG--------TGQAAT--SARG------------ L ! +---------------2p5l_D ! ----------------------IA--KGNA------ L ! +2hdd_A ! +-1 ----------------------IA----NA------ ! +----2 +4qtr_D ! ! ! ----------------------NT----NAITRG-- L ! +---------8 +5zjt_B ! ! ! --------NT-------------------------- ! ! +----7tve_F ! ! ----------------------IT--QTNAMG---- L +-17 +--10 +5zjt_E ! ! ! ! +------------3 ----------------------NT----NAIARG-- L ! ! ! ! ! +1b72_B ! ! ! ! ! --------------------KTIA--QCNA----RT L ! ! ! +-9 +1ig7_A ! ! ! ! +--5 ----------------------IT--QCNAACRG-- L ! ! +-12 ! ! +6a8r_A ! ! ! ! +---------7 ----------------------NT----NA--RG-- L ! ! ! ! ! +1b8i_B ! ! ! ! +--4 ----------------------NC--ITNARGRG-- L -18 ! +-13 ! +6fqq_E ! ! ! ! ! --------------------KGSA--QA-------- L ! ! ! ! +------------------6j5b_C ! ! +-14 ! NGRGTG----LG----LCRG---------------- ! ! ! ! +-------------------4e9f_A ! +-16 ! ----------------RTQT--IT--QANAVTKTKT L ! ! +----------------------2ld5_A ! ! ------YA--------------IA--QCNAYCKG-- L ! +------------------------5flv_I ! ----------------NTVCECSTYTSTYC------ L +--------------------------5ed4_A |
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updated Tue Dec 19 06:32:33 2023