| structure name | STRUCTURE OF A PHOP-DNA COMPLEX (Response regulator) |
| reference | 'Sci 6 24442 2016 |
| source | Mycobacterium tuberculosis |
| experiment | X-ray (resolution=2.40, R-factor=0.185) |
| structural superfamily | CheY-like;C-terminal effector domain of the bipartite response regulators; |
| sequence family | Response regulator receiver domain; Transcriptional regulatory protein, C te; |
| multimeric complexes | 5ed4_AB 5ed4_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NVESYSYR |
Estimated binding specificities ?
readout + contact |  |
A | 7 0 73 0 96 0 7 9 C | 7 96 9 96 0 0 75 7 G | 9 0 7 0 0 96 7 7 T | 73 0 7 0 0 0 7 73scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PHOP | ||
| TCACAGC | PubMed | 5ed4_A(1.29e-11), 5ed4_AB(1.68e-03), 5ed4_EF(1.93e-05) |
Dendrogram of similar interfaces ?
matrix format----------NTVCECSTYTSTYC--RA---- L +------------------5ed4_A +-----3 ----------RG--DTVT--STRG--WT---- L ! ! +--------------6lxn_A ! +---2 ----------------RC--YG--KT------ +--4 +--------------2acj_B ! ! --------------------YGRG-------- ! ! +---4wcg_A +-5 +--------------------1 --------RC--------------------SG ! ! +---7cow_T +-6 ! ------RC------------------------ ! ! +---------------------------6l9z_S +-7 ! --TA---------------------------- ! ! +----------------------------4p0p_A --8 ! ----QA----------------------NG-- ! +----------------------------7k63_U ! ET------------------------------ +----------------------------7aud_E |
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updated Tue Dec 19 10:18:11 2023