| structure name | HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA. (TELOMERIC REPEAT BINDING FACTOR 1) |
| reference | Chapman et al. 'Embo 6 39 2005 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.00, R-factor=0.252) |
| structural superfamily | Homeodomain-like; |
| sequence family | Myblike DNAbinding domain; |
| multimeric complexes | 1w0t_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSVKDR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 12 10 C | 0 0 12 10 10 G | 96 96 74 10 12 T | 0 0 10 64 64scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: HTRF1 | ||
| TTAGGG | PubMed | 1w0t_AB(1.77e-04) |
| TTTAGGG | PubMed | 1w0t_AB(1.69e-03) |
| GGTTTAG | PubMed | 1w0t_A(1.05e-03) |
Dendrogram of similar interfaces ?
matrix format----------YTVC--KGDCKC---- L +----------------------------2qhb_A ! RT--------STVTMCKGDCRGTA-- L ! +1iv6_A ! +---------------1 RA----------------ITQTNAMG L ! +-----7 +5zjt_E ! ! ! RA----YA----------IAQCNAYC L ! +-10 +---------------5flv_I -13 ! ! ------------KG--RTEC------ L ! ! +---------------------1h89_C ! ! RT--------------KTIAQCNA-- L ! ! +-1ig7_A ! ! +-------4 ------------------IA--NA-- ! ! ! +-4qtr_D ! ! +-----6 RT--------STVC--KGDCRG---- L +--12 ! ! +1w0t_A ! ! +---------2 RA--------------KGSAQA---- L ! +-8 +6j5b_C ! ! ! RT----------------IAKGNA-- L ! ! ! +2hdd_A ! +----9 +---------------3 ------------RTQT--ITQANAVT L ! ! ! +2ld5_A ! ! ! --AT----NT--TCTA---------- L +-11 +----------------5zux_A ! ----MG--TGQAAT--SARG------ L ! +--2p5l_D +------------------5 ------DT--RGRCTT--KT------ L +--2o9l_A |
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updated Tue Dec 19 06:13:42 2023