| structure name | CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE (Arginine repressor) |
| reference | Phillips et al. J.Mol.Biol. 379 284 2008 |
| source | Bacillus subtilis |
| experiment | X-ray (resolution=2.85, R-factor=0.208) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Arginine repressor, DNA binding domain; |
| multimeric complexes | 2p5l_DH |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | MTQASR |
Estimated binding specificities ?
| readout + contact |  |
A | 9 0 96 67 0 9 C | 9 0 0 9 0 9 G | 9 96 0 9 0 9 T | 69 0 0 11 96 69scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: AHRC | ||
| CATGAATAAAAATG | PubMed | 2p5l_D(2.61e-04) |
Dendrogram of similar interfaces ?
matrix format------------NAST--RGHTNTST-------- L +-----------------------------7fj2_B +-5 ----------------NASTHT--ST-------- +-6 +-----------------------------3co7_C ! ! ------YA----YTRG------------------ L ! +-----------------------------4mtd_D ! ----DT----RGRCTT----KT----------RT L +-7 +------2o9l_A ! ! +-------------------1 RT--LT--NTHGTA----YT-------------- ! ! ! +------2efw_A ! +--4 ----LT--RT--YTPT------------------ L ! ! +-------------6qil_A +-8 ! +---------2 ----RC---------------------------- ! ! +--3 +-------------7cow_T ! ! ! ------------TTHT------------------ L +-9 ! +-----------------------7b0c_A ! ! ! --RC------------------------------ ! ! +-----------------------------6l9z_S +-10 ! ------------------NAHT------------ L ! ! +-----------------------------7cby_C +-11 ! --------STRGQTQA--ST-------------- L ! ! +-----------------------------7t8k_B +-12 ! --------------------YGRG---------- ! ! +-----------------------------4wcg_A +-13 ! ------------------RTVA--ITNAMCRG-- L ! ! +-----------------------------1yrn_A +-14 ! --------------------IT--QCNAACRG-- L ! ! +-----------------------------6a8r_A -15 ! ----------STVC----KGDC--RG-------- L ! +-----------------------------1w0t_A ! --------------------VA--QTNA------ L +-----------------------------5hod_A |
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updated Tue Dec 19 06:49:17 2023