1hdd_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS
reference	Martin-Blanco et al.
source	Drosophila melanogaster
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1du0_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hdd_C interface=1,3,45,48,49,53, RpRtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQNkraKikks > 1hdd_D interface=45,48, rprtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQnkrakikks
interface signature	RRIQNK/IQ

Estimated binding specificities ?

readout + contact

# IC=7.322 IC/col=0.610 n_of_columns=12

specificity:

A |   0  84  24  24  24   5  24  79   0   5  84   7
C |   0   2  24  24  24   5  24   5   0   7   0  79
G |   0   5  24  24  24   5  24   7   0   5   5   5
T |  96   5  24  24  24  81  24   5  96  79   7   5

scan!

home
updated Fri Dec 15 09:09:12 2023