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legend  pdf

structure nameCOMPUTATIONAL DESIGN OF CO-ASSEMBLING PROTEIN-DNA NANOWIRES
(DUALENH)
referenceMayo et al. Nature 525 230 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=3.20, R-factor=0.270)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes4qtr_AB 4qtr_CD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ----------------IAKGNA------   L                         +-------------6m3d_C    
                                                 +---------4 
  ----------------NT--NAITRG--                   !         +-------------5zjt_B    
                                                 ! 
  ----------------VAQTNA------   L               !                       +5hod_A    
                                                 !              +--------1 
  ----------------IAQCNAYA--RT   L               !              !        +1nk2_P    
                                               +-9       +------3 
  ----------------ITQCNAACRG--   L             ! !       !      !       +6a8r_A    
                                               ! !    +--5      +-------2 
  --RT------------NCSTNARG----   L             ! !    !  !              +1mnm_C    
                                               ! ! +--7  ! 
  --------------RCVTCTNAQTRC--   L             ! ! !  !  +---------------1au7_A    
                                           +--10 ! !  ! 
  --------------RCVACTNAQA----   L         !   ! +-8  +------------------7xrc_C    
                                           !   !   ! 
  NGRGTG--LGLC----------------             !   !   !   +-----------------6vjw_A    
                                        +-11   !   +---6 
  --------------RTVAITNAMCRG--   L      !  !   !       +-----------------1yrn_A    
                                        !  !   !  
  NGRGTG--LGLCRG--------------       +-12  !   +-------------------------7kz0_A    
                                     !  !  !  
  ----------------NT--NAIARG--   L   !  !  +-----------------------------1b72_B    
                                   -13  !  
  ----------------YAQTNAAARG--   L   !  +-----------------------------6wig_A    
                                     !  
  ------NT--------------------       +-----------------------------7tve_F    
                                   

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updated Tue Dec 19 09:22:19 2023