| structure name | MSX-1 HOMEODOMAIN/DNA COMPLEX STRUCTURE (Homeotic protein Msx-1) |
| reference | Abate-Shen et al. Biochemistry 40 12013 2001 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.20, R-factor=0.205) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRKIQNR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 24 54 0 0 96 13 C | 96 24 13 0 0 0 13 G | 0 24 16 0 0 0 54 T | 0 24 13 96 96 0 16scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MSX-1 | ||
| TTAATTG | PubMed | 1ig7_A(5.68e-05) |
| TGTCACTAATTGAAGG | PubMed | 1ig7_A(1.61e-05) |
| ACTAATTGG | PubMed | 1ig7_A(5.86e-07) |
| ACTAATTG | PubMed | 1ig7_A(1.65e-07) |
| TAATTG | PubMed | 1ig7_A(6.99e-06) |
Dendrogram of similar interfaces ?
matrix format--RT------------------KTIAQCNA----RT L +1ig7_A +-----1 RCRT--------------------NT--NAITRG-- L +-----7 +5zjt_B ! ! --RT--------------RTQT--ITQANAVTKT-- L +--8 +-----2ld5_A ! ! --RT--------------------IAKGNA------ L ! ! +2hdd_A ! +-----------2 ------------------------IA--NA------ +---10 +4qtr_D ! ! --RT--------------------NT--NAIARG-- L ! ! +-----1b72_B ! +--------6 --RT--------------------NT--NA--RG-- L +-11 ! +1b8i_B ! ! +----3 ------------------------NCITNARGRG-- L ! ! +6fqq_E ! ! --RA------------------KGSAQA-------- L +-13 ! +---6j5b_C ! ! +---------------5 --RT------------STVC--KGDCRG-------- L ! ! +---1w0t_A +-14 ! --RA--------YA----------IAQCNAYCKG-- L ! ! +---------------------5flv_I ! ! ----------------YTVC--KGDCKC-------- L ! ! +--------------------2qhb_A ! +-12 --RA--------------------ITQTNAMG---- L +-15 ! +-5zjt_E ! ! +------------------4 --RT--------------------ITQCNAACRG-- L ! ! +-6a8r_A ! ! ------QGCGTA--LC-------------------- -16 ! +-------------1orn_A ! +-----------9 ----NGRGTG----LG--LCRG-------------- ! +-------------4e9f_A ! AT------------------NTTCTA---------- L +--------------------------5zux_A |
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updated Tue Dec 19 05:44:39 2023