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structure nameHUMAN CORE-PIC IN THE CLOSED STATE
(GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2)
sourceHOMO SAPIENS
experimentNMR
structural superfamilyRap30/74 interaction domains;"Winged helix" DNA-binding domain;
sequence familyTranscription initiation factor IIF, beta;
multimeric complexes5iy6_AMPTV 5iy7_ABEMNPTV 5iy8_ABEMNPTV 5iy9_ABEMNPTV 5iya_AMPT 5iyb_ABEMNPT 5iyc_ABEMNPT 5iyd_ABEMNPT 6o9l_7AMNPT 6o9l_ES 7lbm_AMOPTW 7lbm_BEQ 7nvr_7AEMORU 7nvs_AMORU 7nvs_BE 7nvt_AMORU 7nvu_ABEMORU 7nvy_7AMORU 7nvy_BE 7nvz_7AMORU 7nw0_7ABEMORU 7zwd_AMORUbc 7zwd_BE 7zx7_AMORUbc 7zx7_BE
reference complex5iy6_T
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKH

Estimated binding specificities ?

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# IC=2.635 IC/col=0.264 n_of_columns=10 specificity:   
A |   9   0   9  24  24  24  24  24  24  11
C |  11  96  67  24  24  24  24  24  24  67
G |  67   0  11  24  24  24  24  24  24   9
T |   9   0   9  24  24  24  24  24  24   9
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updated Mon Dec 18 13:00:41 2023