structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX WITH CLOSED PROMOTER DNA IN DISTAL POSITION
sourceHOMO SAPIENS / SUS SCROFA
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Eukaryotic RPB5 N-terminal domain;RPB5-like RNA polymerase subunit;
reference complex5iy6_M 5iy6_N 5iy6_P 5iy6_T 7nvy_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSHKKH/R/S/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

contactlogo
# IC=9.725 IC/col=0.207 n_of_columns=47 specificity:   
A |   0  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  12   0   6  78   0  84
C |  84  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0  12   0   0   6   0   0
G |  12  66  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  12   0   0   6   0   6
T |   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96  60  96  90   6  96   6
scan!

home
updated Sun Dec 17 08:12:29 2023