structure name | THE HOMING ENDONUCLEASE I-SCEI BOUND TO ITS DNA RECOGNITION REGION (Intron-encoded endonuclease I-SceI) |
reference | Quiocho et al. J.Mol.Biol. 334 685 2003 |
source | Saccharomyces cerevisiae |
experiment | X-ray (resolution=2.25, R-factor=0.235) |
structural superfamily | Homing endonucleases; |
sequence family | LAGLIDADG DNA endonuclease family; |
redundant complexes | 3ool 3oor |
reference complex | 3c0w_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | PNYRRQEKRVQDYNNQNK |
Estimated binding specificities ?
readout + contact |
A | 6 0 87 3 0 0 87 24 24 81 0 96 0 0 0 3 87 78 0 C | 72 0 3 6 0 0 3 24 24 3 96 0 0 0 0 3 3 6 6 G | 9 0 3 81 96 96 3 24 24 0 0 0 96 96 96 6 3 9 3 T | 9 96 3 6 0 0 3 24 24 12 0 0 0 0 0 84 3 3 87scan! |
Dendrogram of similar interfaces ?
matrix formatPTNTYGRGRGQG--EC----KT--RG--VAQC------DTYCNT--------NCQC----------NGKG------------ L +-------------1r7m_B +--------5 ----YTST----------EC--RG--RG----CC--ST--YG------------------YA--------CCKT--KG--TT L ! +-------------2qoj_Z ! ----ST------EC--AT----YG--NA----CT----------------------RA--ET--RG----ATDT----TA-- L --6 +-4lq0_A ! +----3 --------------------------------CC------------------------RT------KGRTVAEC--QT---- L ! ! ! +4yit_A ! ! +-1 --------------------------------CTVA------------------------ST--DA--RGTC--KT--TG-- L +---------------4 +5esp_A ! --------------------------------YC----------QARTRGEC------YA--KG--KG--RTWC-------- L ! +5t2o_A +-----2 --------------------------------HT------------------------YT--QA--YT--RTWCST--ST-- L +5t8d_A |
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updated Mon Dec 18 05:56:25 2023