interface graph thumbnail
legend  pdf

structure nameENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE HIV INTEGRASE GENE; HARBORS 47 POINT MUTATIONS RELATIVE TO WILD-TYPE I-ONUI
(I-ONUI_E-VHIVINT_V2)
referenceStoddard et al. 'Protein 30 503 2017
sourceSYNTHETIC CONSTRUCT
experimentX-ray (resolution=2.15, R-factor=0.185)
structural superfamilyHoming endonucleases;
sequence familyLAGLIDADG endonuclease;
redundant complexes5v0q_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSYRKTTIANAIWHEIRHRREAYQYRWRSSK

Estimated binding specificities ?

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# IC=22.040 IC/col=1.050 n_of_columns=21 specificity:   
A |   0   0   2   0  96   0   4  96  24   8   0  96   0   0   0  96   0  96  58   2   5
C |   0   0   3  89   0   0   2   0  24   8  96   0   0  96  96   0  96   0  24  46   2
G |   0  96  13   1   0  96   6   0  24  25   0   0   0   0   0   0   0   0   8   4  87
T |  96   0  78   6   0   0  84   0  24  55   0   0  96   0   0   0   0   0   6  44   2
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 11:18:40 2023