| structure name | I-SCEI IN COMPLEX WITH A BOTTOM NICKED DNA SUBSTRATE (Intron-encoded endonuclease I-SceI) |
| reference | Quiocho et al. 'Nucleic 36 3287 2008 |
| source | Saccharomyces cerevisiae |
| experiment | X-ray (resolution=2.20, R-factor=?) |
| structural superfamily | Homing endonucleases; |
| sequence family | LAGLIDADG DNA endonuclease family; |
| redundant complexes | 1r7m_B
3c0x_A
 3ool_A
3oor_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | PNYRRCQEKRNHVTQWDYNNQNK |
Estimated binding specificities ?
readout + contact |  |
A | 89 3 6 76 0 0 0 0 0 0 86 24 1 13 6 0 0 96 C | 0 3 8 6 96 96 96 0 0 3 4 24 3 80 86 19 3 0 G | 7 6 6 8 0 0 0 0 96 0 0 24 0 0 0 3 1 0 T | 0 84 76 6 0 0 0 96 0 93 6 24 92 3 4 74 92 0scan! |
Dendrogram of similar interfaces ?
matrix formatPTNTYGRGRG----QGECKTRGNTHTVATAQC----WADTYCNT------NCQC----------------NCKT-------------- L +------------3c0w_A +---------10 ------YTLT----VTTG--------------------------RGRGWC--------------DCDC--RGHAVC------------ L ! +------------2vs7_A ! ----------------RG--------------CA--FT--NT----------------YT--LA--KG------FTWC--EATT---- L ! +6uw0_B ! +-1 ----------------KG--------------CA--FC--------------------YA--KG--YG--KG--FTWT--------TA L ! ! +6bd0_A ! +--5 ----------------KG--------------CA--FC--------------------YG--KG--KG--KG--FTWC----TG---- L -11 ! ! +6uwj_A ! ! +-3 ----------------RT--------------HT------------------------YG--LA--KG--RG--LTWC------RGTG L ! ! +5t2n_A ! +------7 ------------QG------------------CC----AC----------------------RT------KGRTVAEC--QT------ L ! ! ! +4yit_A ! ! ! +-2 --------------KT----------------CTST--------------------TG--RA--ET--RG----ATDT----TA---- L ! ! ! ! +4lq0_A ! ! +--6 --------------------------------CTVA--FT------------------------ST--DA--RGTC--KT--TG---- L +-------------9 ! +5esp_A ! +-4 ----------RG--------------------SARA--------------------TG----------RG--RGCC--------TA-- L ! +6bce_A ! ------------DG------------------SA--------------------IG----NA--RG--RT--DTICDG----IA---- L ! +---3fd2_A +-----8 --------------------------------STQA--KG--------------TC----------YT--SC--VCDTRG--ST---- L +---3mxa_A |
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updated Tue Dec 19 07:12:11 2023