1gji_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C-REL BOUND TO DNA (C-REL PROTO-ONCOGENE PROTEIN)
reference	Ruetsche et al. Structure 9 669 2001
source	Gallus gallus
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
sequence family	Rel homology domain RHD; IPT/TIG domain;
multimeric complexes	1gji_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gji_A interface=15,17,18,20,21,172, pyieifeqprqrgmRfRYkCEgrsagsipgehstdnnktfpsiqilnyfgkvkirttlvtknepykphphdlvgkdcrdgyyeaefgperrvlsfqnlgiqcvkkkdlkesislriskkinpfnvpeeqlhnideydlnvvrlcfqaflpdehgnytlalpplisnpiydnRapntaelricrvnkncgsvkggdeifilcdkvqkddievrfvldnweakgsfsqadvhrqvaivfrtppflrditepitvkmqlrrpsdqevsepmdfrylpd
interface signature	RRYCER

Estimated binding specificities ?

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# IC=4.319 IC/col=0.864 n_of_columns=5

specificity:

A |  15   0   0  96  54
C |  27   0   0   0  16
G |  13  96  96   0  13
T |  41   0   0   0  13

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: C-REL
TTGGAAATTCC	PubMed	1gji_A(7.38e-03), 1gji_AB(1.89e-04)
GGGAAAGTAC	PubMed	1gji_A(5.42e-03)
CGGAGTTTCC	PubMed	1gji_A(5.42e-03), 1gji_AB(1.02e-04)

Dendrogram of similar interfaces ?

matrix format

  
  RGRGYTCTEC--------RT------   L                               +1gji_A    
                                                         +-----1 
  RGRG----EC--------RGPTKT--   L                         !     +2ram_A    
                                                         ! 
  RGRGYTCCEC----KT--KTPTKTRG   L          +--------------6     +1nfk_A    
                                          !              !   +-2 
  RCRCYC--EC--HC----KT----RG   L          !              !   ! +1svc_P    
                                          !              +---5 
  RGRGYA--EC--HG----KG------   L   +------7                  ! +7w7l_B    
                                   !      !                  +-3 
  RGRGYTCCEC--HG----KG------   L   !      !                    +1a3q_A    
                                 --8      ! 
  RG--YT--TTECRG------QA----   L   !      +--------------------1imh_C    
                                   ! 
  ----------------RTVC------   L   !                          +4l0y_A    
                                   +--------------------------4 
  ----------------RTVC------   L                              +3wu1_A

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updated Tue Dec 19 05:40:25 2023