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structure nameA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
(PROTEIN TRANSCRIPTION FACTOR NF-KB P65)
referenceChen et al. Nat.Struct.Biol. 5 67 1998
sourceMus musculus
experimentX-ray (resolution=2.40, R-factor=0.213)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
multimeric complexes1le5_AB 1le5_EF 1le9_AB 1le9_EF 1lei_AB 1ram_AB 1vkx_AB 2i9t_AB 2ram_AB 3gut_ABD 3gut_CF 3gut_EGH 5u01_ABCD
redundant complexes1le5_A 1le9_A 1ram_B 1vkx_A 5u01_A 1lei 2i9t 3gut
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  RGRG----EC----------RGPTKT--                                       +2ram_A    
                                                      +--------------1 
  RGRGYTCTECRT--------RT--KA--   L               +----2              +2o61_A    
                                                 !    ! 
  RGRGYTCTEC----------RT------   L            +--3    +--------------1gji_A    
                                              !  ! 
  RGRGYTCCEC----------KT------              +-4  +-------------------2v2t_A    
                                            ! ! 
  RGRGYTCCEC----HG----KG------   L        +-5 +----------------------1a3q_A    
                                          ! ! 
  RGRGYTCCEC----HTKT--KTPTKTRG   L      +-6 +------------------------1nfk_A    
                                        ! ! 
  RGRGYACCEC--SAHG----KG------   L   +--7 +-------------------------7cli_B    
                                     !  ! 
  RGRGYA--EC----HG----KG------   L --8  +-------------------------7w7l_B    
                                     ! 
  ------------------RTVC------   L   +----------------------------3wu1_A    
                                   

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updated Tue Dec 19 06:56:54 2023