structure name | STRUCTURAL BASIS OF ASYMMETRIC DNA METHYLATION AND ATP-TRIGGERED LONG- RANGE DIFFUSION BY ECOP15I (RESTRICTION ENDONUCLEASE ECOP15I, MODIFICATION SUBUNIT) |
reference | Aggarwal et al. 'Nat 6 7363 2015 |
source | ESCHERICHIA COLI |
experiment | X-ray (resolution=2.60, R-factor=0.221) |
structural superfamily | S-adenosyl-L-methionine-dependent methyltransferases; |
sequence family | DNA methylase; |
multimeric complexes | 4zcf_ABC |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | DYTKDTDNNEDRNK |
Estimated binding specificities ?
contact |
A | 57 0 0 0 0 13 0 C | 13 96 0 0 96 13 0 G | 13 0 0 96 0 16 96 T | 13 0 96 0 0 54 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ECOP15I | ||
CAGCAG | PubMed | 4zcf_B(8.50e-10), 4zcf_ABC(3.65e-09) |
CTGATG | PubMed | 4zcf_B(6.90e-05), 4zcf_ABC(1.66e-04) |
CATCAG | PubMed | 4zcf_B(6.90e-05), 4zcf_ABC(1.66e-04) |
CTGCTG | PubMed | 4zcf_B(8.50e-10), 4zcf_ABC(3.65e-09) |
Dendrogram of similar interfaces ?
matrix formatDAYA--TAKTDA----------------TCDTNGNG----EA--RTNAKA L +--------------------4zcf_B +------2 DA------------FT------YTHTMCPCNCFTKTTCRTEA----TAKA L ! +--------------------6pbd_A +-3 ------NT------------------------------------------ ! ! +-6pa7_K --4 +-------------------------1 ----CC----------ECNCVC------------------RCRC--RC-- ! +-6kdb_D ! NAYA--------KT------------------------------------ L +----------------------------2ih2_D |
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updated Tue Dec 19 09:52:27 2023