4zcf_ABC : 3D-footprint complex

structure name	STRUCTURAL BASIS OF ASYMMETRIC DNA METHYLATION AND ATP-TRIGGERED LONG- RANGE DIFFUSION BY ECOP15I
reference	Aggarwal et al. 'Nat 6 7363 2015
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	4zcf_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4zcf_A interface=288,301,302,303,305,306,307,312,333, anskqlavlkanfpqcfdkngafiqeklleiirasekesyslnwlgksyarllanlppktllaedkthnqqeenknsqhllikgdnlevlkhmvnayaekvkmiyidppyntgkdgfvynddrftpeqlselagidldeakrilefttkgssshsawltfiyprlyiarelmredgtifisidhnefsqlklvcdeifgeqnhvgdlvwknatdnnpsniaveheyiivytknkeqlisewksnisdvknllvnigeefaskytgnelqekytqwfrehrselwpldRykyidkdgiytgSQSvHNPgkegYrydiihpktkkpckqplmgyRfpldtmdrllseekiifgddenkiielkvyakdykqklssvihldgrvatnelkelfpmtqpfnaktiklvedlisfacdgegivldffagsgttahtvfnlnnknktsyqfitvqldeptkksdamkhgyntifdltkerliraskknrdqgfkvyqlmpdfrakdeseltffddvvltpeqydtllttwclydgsllttpiedvdlggykahlcdgrlyliapnftsealkallqkvdsdkdfapnkvvfygsnfsakqmelnealksyansieldlvvrn > 4zcf_B interface=120,123,125,127,128,227,228,229,230,239,392,411,413, kketifevetanskqlavlkanfpqcfdngafiqeklleiirasevelskesyslnwlgksyarllanlppktllaedkthnqqeenknsqhllikgdnlevlkhmvnayaekvkmiyiDppYnTgKDgfvynddrkftpeqlselagidldeakrilefttkgssshsawltfiyprlyiarelmredgtifisidhnefsqlklvcdeifgeqnhvgdlvwknaTDNNpsniavehEyiivytkkeqlisewksnisdvknllvnigeefaskytgnelqekytqwfrehrselwpldrykyidkdgiytgsqsvhnpgkegyrydiihpktkkpckqplmgyrfpldtmdrllseekiifgddekiielkvyakdykqklssvihldgRvatnelkelfpemtqpftNaKtiklvedlisfacdgegivldffagsgttahtvfnlnnknktsyqfitvqldeptkdksdamkhgyntifdltkerliraskknrdqgfkvyqlmpdfvvltpeqydtllttwclydgsllttpiedvdlggykahlcdgrlyliapnftalkallqkdkdfapnkvvfygsnsakqmelnealksyankkeldlvvrn > 4zcf_C interface= tleknlphqkagvdavmnvfvsatphltdnvavrllanpelklseqqyynniknvqafngiahskdnhnaksniidvsmetgtgktytyiktifdlnksfginkfiiivptlsikagtvNflKsDaLKehfrddykrelrtyvvesqkmpqaihdfveasnfkkyihvlvinsgminsksltdtydtglldnqfntpvdalravkpfiiidephrfptgkktweniEKFNaqyiirygAtfsegyknlvyrltavdafnddlvkgidayiednanlkfvkdgkeatffklakslskthsaihdltldalntavlsngielkigssinpysydqtladnmmrkavkehfklekelltqprikpltlffiddlktkfeeyvlaeanellyknyLektvtnissvhggyieqeInEilhdkelllsldnprrfifskwtlregwdnpnvfqicklrssklqevgrglrlpvneymcrvknftlkyyvdftekdfvdslvkevnesspskftqelkeqidnfkdsdaysrlkselkelwdlinqkavieykinseseflsifksfmleetersyrefldnlsqtifvkhgtlhkvfcdikdtilniqtirkiksgfskyllnnsfslgynl
interface signature	RSQSHNPYR/DYTKDTDNNERNK/NKDLKEKFNALIE

Estimated binding specificities ?

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# IC=8.831 IC/col=1.104 n_of_columns=8

specificity:

A |  49   0   0   0   0   0   0   6
C |  15  96   0   0  96   0   0   6
G |  15   0   0  96   0   0  96   6
T |  17   0  96   0   0  96   0  78

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updated Fri Dec 15 22:30:24 2023