interface graph thumbnail
legend  pdf

structure nameRADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 20.6 MGY
(Regulatory protein)
referenceMcGeehan et al.
sourceEnterobacter sp. RFL1396
experimentX-ray (resolution=2.80, R-factor=0.239)
structural superfamilylambda repressor-like DNA-binding domains;
sequence familyHelixturnhelix;
multimeric complexes3clc_ABCD 3s8q_AB 3ufd_AB 4ivz_AF 4iwr_AB 4iwr_EF 4x4b_ABCD 4x4c_ABCD 4x4d_ABCD 4x4e_ABCD 4x4f_ABCD 4x4g_ABCD 4x4h_ABCD 4x4i_ABCD
reference complex3s8q_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRTYSR

Estimated binding specificities ?

readout + contactlogo
# IC=6.376 IC/col=0.911 n_of_columns=7 specificity:   
A |   0  78   0   6   0  90   6
C |  84   6  96  18   0   0  78
G |   6   6   0  60  96   6   6
T |   6   6   0  12   0   0   6
scan!

home
updated Mon Dec 18 11:31:01 2023