3ufd_AB : 3D-footprint complex

structure name	C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR SITE OM
reference	McGeehan et al. 'Nucleic 40 10532 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ufd_A interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3ufd_B interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilkh
interface signature	DRTYSR/DRTYSR

Estimated binding specificities ?

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# IC=19.353 IC/col=1.075 n_of_columns=18

specificity:

A |   1   0   1  71   1  71   0   1  94   1  80   0   1   0   6  93   0  92
C |   1   0   1   9   1   5  96   2   1   1   2   0   6  96   3   1  96   2
G |   2  96   4   5  94  11   0   1   0   1   7  96   9   0  82   1   0   1
T |  92   0  90  11   0   9   0  92   1  93   7   0  80   0   5   1   0   1

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updated Fri Dec 15 17:09:27 2023