4m0a_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

Dendrogram of similar interfaces ?

matrix format

structure name	HUMAN DNA POLYMERASE MU POST-CATALYTIC COMPLEX (DNA-DIRECTED DNARNA POLYMERASE MU)
reference	Pedersen et al. Nat.Struct.Mol.Biol. 21 253 2014
source	HOMO SAPIENS
experiment	X-ray (resolution=1.85, R-factor=0.165)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence family	Fingers domain of DNA polymerase lamb;
reference complex	5vzi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4m0a_A interface=230,232,269,272,273,276, mpayacqrptplthhntglsealeilaeaagfegsegrlltfcraasvlkalpspvttlsqlqglphfgehssrvvqellehgvceevervrrseryqtmklftqifgvgvktadrwyreglrtlddlreqpqkltqqqkaglqhhqdlstpvlrsdvdalqqvveeavgqalpgatvtltggfrrgklqghdvdflithpkegqeagllprvmcrlqdqglilyhqfeRsFcifrlpqpgswkavrvdlvvapvsqfpfallgwtgsKlfQRelRrfsrkekglwlnshglfdpeqktffqaaseedifrhlgleylppeqrna

  
  ----LC--RCRAFT--KTQTRART                      +4m0a_A    
                                              +-1 
  --SALTAART------RGEGRGRG          +---------2 +4qz9_A    
                                    !         ! 
  HC--------KG--YCDCNCKGRG       +--3         +--4kli_A    
                                 !  ! 
  WC--LC----KA--YCAGNGRCRG     --4  +------------2bcq_A    
                                 ! 
  ----------KT--HCVGLCIGRG       +---------------5hrb_A

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updated Mon Dec 18 10:53:40 2023