4qz9_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

Dendrogram of similar interfaces ?

matrix format

structure name	MOUSE TDT IN COMPLEX WITH A DSB SUBSTRATE, C-A BASE PAIR (DNA NUCLEOTIDYLEXOTRANSFERASE)
reference	Delarue et al. 'Embo 34 1126 2015
source	MUS MUSCULUS
experiment	X-ray (resolution=2.05, R-factor=0.185)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence family	Fingers domain of DNA polymerase lamb; Nucleotidyltransferase domain;
redundant complexes	5d4b 4qzh 4qza 4qzb 4qzg 4qzc 4qzf 4qz8 4qzd 4qze
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4qz9_A interface=41,43,44,47, vkkisqyacqrrttlnnynqlftdaldilaendelrenegScLAfmRassvlkslpfpitsmkdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfwkqqglllycdilestfekfkaldhfqkcflilkldhgrvhsegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna

  
  --SALTAART------RGEGRGRG                        +4qz9_A    
                                               +--1 
  --SALTAART------RGEGRGRG                     !  +6go6_A    
                                 +-------------3 
  ----LC--RCRAFT--KTQTRART       !             ! +-6wie_A    
                                 !             +-2 
  HCKG--AG--KG--YG----KARA     --6               +-5wo0_A    
                                 ! 
  WC--LC----KA--YCAGNGRCRG       !      +---------2bcq_A    
                                 ! +----4 
  ----------------KA--VARA       +-5    +---------4p4m_A    
                                   ! 
  ----------KT--HCVGLCIGRG         +--------------5hrb_A

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updated Mon Dec 18 11:13:30 2023