legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

Dendrogram of similar interfaces ?

structure name	DNA POLYMERASE BETA MATCHED PRODUCT COMPLEX WITH MG2+, 90 S (DNA polymerase beta)
reference	Freudenthal et al. 'Cell(Cambridge,Mass.)' 154 157 2013
source	Homo sapiens
experiment	X-ray (resolution=1.60, R-factor=0.188)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence family	Fingers domain of DNA polymerase lamb;
redundant complexes	1bpx_A 1bpy_A 1bpz_A 1huo_A 1huz_A 1mq2_A 1mq3_A 1tv9_A 1tva_A 1zjm_A 1zjn_A 1zqa_A 1zqb_A 1zqc_A 1zqd_A 1zqe_A 1zqf_A 1zqg_A 1zqh_A 1zqi_A 1zqj_A 1zqk_A 1zql_A 1zqm_A 1zqn_A 1zqo_A 1zqp_A 1zqq_A 1zqr_A 1zqs_A 1zqt_A 2bpf_A 2bpg_B 2fmp_A 2fmq_A 2fms_A 2i9g_A 2iso_A 2isp_A 2p66_A 2pxi_A 3c2k_A 3c2l_A 3c2m_A 3gdx_A 3isb_A 3isc_A 3isd_A 3jpn_A 3jpo_A 3jpp_A 3jpq_A 3jpr_A 3jps_A 3jpt_A 3lk9_A 3mby_A 3ogu_A 3rh4_A 3rh5_A 3rh6_A 3rje_A 3rjf_A 3rjg_A 3rjh_A 3rji_A 3rjj_A 3rjk_A 3tfr_A 3tfs_A 3uxp_B 3v72_A 3v7j_A 3v7k_A 4do9_A 4doa_A 4dob_A 4doc_A 4f5n_A 4f5o_A 4f5p_A 4f5q_A 4f5r_B 4gxi_A 4gxj_A 4gxk_A 4jwm_A 4jwn_A 4kle_A 4klf_A 4klg_A 4klh_A 4klj_A 4kll_A 4klm_A 4klo_A 4klq_A 4kls_A 4klt_A 4klu_A 4lvs_A 4m2y_A 4m47_A 4m9g_A 4m9h_A 4m9j_A 4m9l_A 4m9n_A 4mf2_A 4mf8_A 4mfa_A 4mfc_A 4mff_A 4nlk_A 4nln_A 4nlz_A 4nm1_A 4nm2_A 4nxz_A 4ny8_A 4o5c_A 4o5e_A 4o5k_A 4o9m_A 4p2h_A 4pgq_A 4pgx_A 4pgy_A 4ph5_A 4pha_A 4phd_A 4phe_A 4php_A 4ppx_A 4r63_A 4r64_A 4r65_A 4r66_A 4rpy_A 4rpz_A 4rq0_A 4rq1_A 4rq2_A 4rq3_A 4rq4_A 4rq5_A 4rq6_A 4rq7_A 4rq8_A 4rt2_A 4rt3_A 4tup_A 4tuq_A 4tur_A 4tus_A 4uaw_A 4uay_A 4uaz_A 4ub1_A 4ub2_A 4ub3_A 4ub4_A 4ub5_A 4ubb_A 4ubc_A 4ymm_A 4ymn_A 4ymo_A 4yn4_A 4z6c_A 4z6d_A 4z6e_A 4z6f_A 5bol_A 5bom_A 5bpc_A 5db6_A 5db7_A 5db8_A 5db9_A 5dba_A 5dbb_A 5dbc_A 5eoz_A 5hhh_A 5hhi_A 5j0o_A 5j0p_A 5j0q_A 5j0r_A 5j0s_A 5j0t_A 5j0u_A 5j0w_A 5j0x_A 5j0y_A 5j29_A 5j2a_A 5j2b_A 5j2c_A 5j2d_A 5j2e_A 5j2f_A 5j2g_A 5j2h_A 5j2i_A 5j2j_A 5j2k_A 5tb8_A 5tba_A 5tbb_A 5tbc_A 5tzv_A 5u2r_A 5u2s_A 5u2t_A 5u8g_A 5u8h_A 5u8i_A 5u9h_A 5ugn_A 5ugo_A 5ugp_A 5v1f_A 5v1g_A 5v1h_A 5v1i_A 5v1j_A 5v1n_A 5v1o_A 5v1p_A 5v1r_A 5vez_A 5vrx_A 5vry_A 5vrz_A 5vs0_A 5vs1_A 5vs2_A 5vs3_A 5vs4_A 5wnx_A 5wny_A 5wnz_A 5wo0_A 6bel_A 6bem_A 6bte_A 6cly_A 6cpq_A 6cr3_A 6cr4_A 6cr5_A 6cr6_A 6cr7_A 6cr8_A 6cr9_A 6crb_A 6crc_A 6crh_A 6cti_A 6ctj_A 6ctk_A 6ctl_A 6ctm_A 6ctn_A 6cto_A 6ctq_A 6ctr_A 6ctt_A 6ctu_A 6ctv_A 6ctw_A 6ctx_A 6cu9_A 6cua_A 6cub_A 6dia_A 6dic_A 6e3r_A 6e3v_A 6e3w_A 6e3x_A 6g2q_A 6mr7_A 6mr8_A 6n2r_A 6n2s_A 6n2t_A 6nkr_A 6nks_A 6nkt_A 6nku_A 6nkv_A 6nkw_A 6nkx_A 6nky_A 6nkz_A 6nl0_A 6ph5_A 6ph6_A 6pkz_A 6u2o_A 6u6b_A 6uok_F 6uol_A 6uom_A 6w2m_A 7ice_A 7icf_A 7icg_A 7ich_A 7ici_A 7icj_A 7ick_A 7icl_A 7icm_A 7icn_A 7ico_A 7icp_A 7icq_A 7icr_A 7ics_A 7ict_A 7icu_A 7icv_A 7k96_A 7k97_A 7mz0_A 7mz1_A 7mz2_A 7mz3_A 7mz4_A 7mz8_A 7rbe_A 7rbf_A 7rbg_A 7rbh_A 7rbi_A 7rbj_A 7rbk_A 7rbl_A 7rbm_A 7rbn_A 7rbo_A 7s9j_A 7s9k_A 7s9l_A 7s9m_A 7s9n_A 7s9o_A 7s9p_A 7s9q_A 8ica_A 8icb_A 8icc_A 8ice_A 8icf_A 8icg_A 8ich_A 8ici_A 8icj_A 8ick_A 8icl_A 8icm_A 8icn_A 8ico_A 8icp_A 8icq_A 8icr_A 8ics_A 8ict_A 8icu_A 8icv_A 8icw_A 8icx_A 8icy_A 8icz_A 9ica_A 9icb_A 9icc_A 9ice_A 9icf_A 9icg_A 9ich_A 9ici_A 9icj_A 9ick_A 9icl_A 9icm_A 9icn_A 9ico_A 9icp_A 9icq_A 9icr_A 9ics_A 9ict_A 9icu_A 9icv_A 9icw_A 9icx_A 9icy_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kli_A interface=28,220,225,262,267,270,271,274,286, tlnggitdmltelanfeknvsqaihkyNayrkaasviakyphkiksgaeakklpgvgtkiaekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrknedklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessgdmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlSkgetKfmgvcqlpskndekeyphrridirlipkdqyycgvlYftgsDifNKnmRahalekgftinEytirplgvtgvageplpvdsekdifdyiqwkyrepkdrse