interface graph thumbnail
legend  pdf

structure nameC.ESP1396I BOUND TO A 25 BASE PAIR OPERATOR SITE
(Regulatory protein)
referenceMartin et al.
sourceEnterobacter sp.
experimentX-ray (resolution=2.40, R-factor=0.200)
structural superfamilylambda repressor-like DNA-binding domains;
sequence familyHelixturnhelix;
multimeric complexes3clc_ABCD 3s8q_AB 3ufd_AB 4ivz_AF 4iwr_AB 4iwr_EF 4x4b_ABCD 4x4c_ABCD 4x4d_ABCD 4x4e_ABCD 4x4f_ABCD 4x4g_ABCD 4x4h_ABCD 4x4i_ABCD
reference complex3s8q_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQEDRTYSRR

Estimated binding specificities ?

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# IC=5.478 IC/col=0.913 n_of_columns=6 specificity:   
A |   0   1  10  55   0  96
C |   0  10  21  10  96   0
G |  96   0  10  10   0   0
T |   0  85  55  21   0   0
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updated Mon Dec 18 10:32:41 2023