interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
(PROTEIN NF-KAPPA B P65 SUBUNIT)
referenceHuang et al.
sourceMUS MUSCULUS
experimentX-ray (resolution=2.90, R-factor=0.208)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
multimeric complexes1le5_AB 1le5_EF 1le9_AB 1le9_EF 1lei_AB 1ram_AB 1vkx_AB 2i9t_AB 2ram_AB 3gut_ABD 3gut_CF 3gut_EGH 5u01_ABCD
reference complex2ram_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCER

Estimated binding specificities ?

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# IC=4.088 IC/col=1.022 n_of_columns=4 specificity:   
A |  11   0   4   0
C |   9   0  88  96
G |   9   0   2   0
T |  67  96   2   0
scan!

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updated Mon Dec 18 06:12:18 2023