1le9_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THE IG/HIV-KB SITI
reference	Chen-Park et al. J.Biol.Chem. 277 24694 2002
source	MUS MUSCULUS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 2ram_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1le9_A interface=15,17,18,20,21,25,169, ayveiieqpkqrgmRfRYkCEgrsAgsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 1le9_B interface=16,18,19,21,22,26,203, gpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCEAR/RRYCEHK

Estimated binding specificities ?

readout + contact

# IC=9.878 IC/col=0.988 n_of_columns=10

specificity:

A |   0   0  84   0  11  11   0   0   0  13
C |   0   0   0  96   5  13   0  96  96  11
G |  96  96   7   0  11  16   0   0   0  16
T |   0   0   5   0  69  56  96   0   0  56

scan!

home
updated Fri Dec 15 09:32:49 2023