3gut_ABD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
reference	Stroud et al. J.Mol.Biol. 393 98 2009
source	HOMO SAPIENS
experiment	X-ray (resolution=3.59, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 2ram_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3gut_A interface=15,17,18,20,21,169, ayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 3gut_B interface=16,18,19,22,203, gpylqileqpkqrgfRfRYvcEgpshgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype > 3gut_D interface=16,18,19,21,22,26,203, gpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCER/RRYEK/RRYCEHK

Estimated binding specificities ?

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# IC=13.773 IC/col=0.765 n_of_columns=18

specificity:

A |   0   7   0   0   0  24  24  24  24   5   0  73  69  24   2   0   0   0
C |   0   5  96  96  96  24  24  24  24   8   0   5  11  24   5   0  96  96
G |  96   5   0   0   0  24  24  24  24  67  96  13  11  24  84   0   0   0
T |   0  79   0   0   0  24  24  24  24  16   0   5   5  24   5  96   0   0

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updated Fri Dec 15 14:45:02 2023