5u01_ABCD : 3D-footprint complex

structure name	COOPERATIVE DNA BINDING BY TWO RELA DIMERS
reference	Ghosh et al. 'J. 292 18821 2017
source	MUS MUSCULUS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	2ram_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5u01_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_B interface=15,17,18,20,21,23,24,169, pyveiieqpkqrgmRfRYkCEgRSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_C interface=15,17,18,21,23,169, pyveiieqpkqrgmRfRYkcEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_D interface=15,17,18,20,21,24,169, pyveiieqpkqrgmRfRYkCEgrSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERSR/RRYERR/RRYCESR

Estimated binding specificities ?

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# IC=24.012 IC/col=1.044 n_of_columns=23

specificity:

A |   4   0   0  96  76  24   8   4   0   0   0   0   0   0  96  84  24   4   0   0   0   0   4
C |  80   0   0   0   8  24   4   4  96  96  96   0   0   0   0   4  24   4   0  96  96   0  84
G |   4  96  96   0   4  24  12   4   0   0   0  96  96  96   0   4  24   4   0   0   0  96   4
T |   8   0   0   0   8  24  72  84   0   0   0   0   0   0   0   4  24  84  96   0   0   0   4

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updated Sat Dec 16 05:53:48 2023