7m08_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

Dendrogram of similar interfaces ?

matrix format

structure name	POST-CATALYTIC NICKED COMPLEX OF DNA POLYMERASE LAMBDA WITH BOUND 1- NT GAPPED SSB SUBSTRATE AND INCOMING DUMPNPP (DNA POLYMERASE LAMBDA)
reference	Kaminski et al. 'To ? ? ?
source	HOMO SAPIENS
experiment	X-ray (resolution=1.70, R-factor=0.187)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence family	Fingers domain of DNA polymerase lamb;
multimeric complexes	1rzt_EI 1xsl_EI 5iio_EI
redundant complexes	3uq0 3uq2 5cj7 5ddm 4xq8 5cp2 4xrh 5chg 7m0a 7m0b 7m0c 7m0d 5cr0 5ca7
reference complex	2bcq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7m08_A interface=134,234,267,272,275,276,279, wvcaqpssqkatnhnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslttQqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqKylgvcrlpgpgrrhrrldiivvpysefacallYftgsAhfNRsmRalaktkgmslsehalstagrvlptptekdvfrllglpyrepaerdw

  
  WC--LC----KA--YCATNTRARG          +---------------------7m08_A    
                                 +--2 
  ----LC--RCRAFT--KG--RARG       !  !                   +-7kt2_A    
                               --3  +-------------------1 
  HCKG--AG--KG--YG--NGKGRG       !                      +-7rbh_A    
                                 ! 
  ----------KC----KA--VARA       +------------------------4p4m_A

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updated Mon Dec 18 20:55:14 2023