legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

home
updated Fri Dec 15 10:56:42 2023

structure name	CRYSTAL STRUCTURE OF DNA POLYMERASE LAMBDA COMPLEXED WITH A TWO NUCLEOTIDE GAP DNA MOLECULE
reference	Garcia-Diaz et al. Mol.Cell 13 561 2004
source	Homo sapiens
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;DNA polymerase beta-like, second domain;
reference complex	2bcq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rzt_E interface=25,26,28, tnhnlhiteklevlakaysvqgdkWRaLgyakainalksfhkpvtsyqeacsipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrvlptptekdvfrllglpyrepaerdw > 1rzt_I interface=25,26,28, tnhnlhiteklevlakaysvqgdkWRaLgyakainalksfhkpvtsyqeacsipgigkrmaekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslttqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrvlptptekdvfrllglpyrepaerdw