7lbx_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) IN COMPLEX WITH LSP (Transcription factor A, mitochondrial)
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=0.210)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
multimeric complexes	3tq6_AB 6erp_ACF 6erp_BGJ 6erq_ACF 6erq_BGJ 6hb4_ADGJ 6hc3_ADGJ 7lbw_AB
reference complex	3tq6_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbx_B interface=9,12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139,143, svlascpkKpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvKenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllr
interface signature	KSYLSLTTIMKRYNVFPQLK

Estimated binding specificities ?

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# IC=10.304 IC/col=0.644 n_of_columns=16

specificity:

A |   0   0   0   7  24  24  24  24  24  14  24   0   0   0   0   7
C |   0   0   0   8  24  24  24  24  24  14  24  96   0   7   0  14
G |   0   0  96  81  24  24  24  24  24  61  24   0   0  89   8  14
T |  96  96   0   0  24  24  24  24  24   7  24   0  96   0  88  61

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updated Mon Dec 18 20:51:42 2023