3tq6_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TRANSCRIPTION FACTOR A, TFAM OR MTTFA, BOUND TO THE LIGHT STRAND PROMOTER LSP
reference	Jimenez-Menendez et al. Nat.Struct.Mol.Biol. 18 1281 2011
source	Homo sapiens
experiment	X-ray (resolution=2.45, R-factor=?)
structural superfamily	HMG-box;
reference complex	3tq6_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3tq6_A interface=12,14,15,18,22,34,35,38,100,104,114,117,119,120,123,127,135,136,139,190,191, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprSaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrRTikk > 3tq6_B interface=12,14,15,18,22,34,35,38,97,100,104,114,117,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkRkaMtkkKeltllgkpkRprSaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSLTTIMKRSYNVFPQLRT/SYLSLTTIRMKRSYNVFPQL

Estimated binding specificities ?

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# IC=27.260 IC/col=0.737 n_of_columns=37

specificity:

A |  93   0  96   0  24  24  79  24  24  24  24   0   0  96  96   1  82  24  24  24  65  93   0  96   0  10   5  79  24  24  24  24   0   0  96  96   0
C |   0  96   0   0  24  24  10  24  24  24  24  96  96   0   0  93   7  24  24  24  10   2  96   0   0   5  79  10  24  24  24  24  93  96   0   0  93
G |   2   0   0  96  24  24   2  24  24  24  24   0   0   0   0   2   2  24  24  24   8   1   0   0  96   7   5   2  24  24  24  24   2   0   0   0   2
T |   1   0   0   0  24  24   5  24  24  24  24   0   0   0   0   0   5  24  24  24  13   0   0   0   0  74   7   5  24  24  24  24   1   0   0   0   1

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updated Fri Dec 15 17:01:39 2023