7lbw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) BRIDGING TWO NON-SEQUENCE SPECIFIC DNA SUBSTRATES
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	HMG-box;
reference complex	3tq6_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbw_A interface=12,14,15,18,19,22,34,35,38,100,104,114,119,120,123,127,135,136,139,191, svlascpkkpvSsYLrfSKeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrrTik > 7lbw_B interface=12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSKLTTIMKRYNVFPQLT/SYLSLTTIMKRYNVFPQL

Estimated binding specificities ?

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# IC=26.141 IC/col=0.688 n_of_columns=38

specificity:

A |   0   0   0   0  24  24   3  24   6  24  69   0   0   0   0  24  24  24   3  24  24  24  24   0  96   0   0   9  24  24  24  87  12  24  96  96   0   0
C |  96  96   0   0  24  24   3  24   9  24   9   0  96   0  96  24  24  24   3  24  24  24  24   0   0   0  96   9  24  24  24   3   9  24   0   0   0   0
G |   0   0   0   0  24  24   3  24   9  24   9  96   0   0   0  24  24  24  87  24  24  24  24  96   0  96   0   9  24  24  24   3  69  24   0   0  96  96
T |   0   0  96  96  24  24  87  24  72  24   9   0   0  96   0  24  24  24   3  24  24  24  24   0   0   0   0  69  24  24  24   3   6  24   0   0   0   0

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updated Sun Dec 17 05:35:32 2023