| structure name | CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TRANSCRIPTION FACTOR A, TFAM OR MTTFA, BOUND TO THE LIGHT STRAND PROMOTER LSP (Transcription factor A, mitochondrial) |
| reference | Jimenez-Menendez et al. Nat.Struct.Mol.Biol. 18 1281 2011 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.45, R-factor=0.183) |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| multimeric complexes | 3tq6_AB 6erp_ACF 6erp_BGJ 6erq_ACF 6erq_BGJ 6hb4_ADGJ 6hc3_ADGJ 7lbw_AB |
| redundant complexes | 6hb4_J
 6hc3_D
7lbw_B
7lbx_B
6erp
6erq
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SYLSLTTIRMKRSYNVFPQL |
Estimated binding specificities ?
| readout + contact |  |
A | 84 0 96 0 11 11 73 24 24 24 24 0 0 96 96 5 C | 5 96 0 0 5 67 13 24 24 24 24 90 96 0 0 81 G | 5 0 0 96 7 5 5 24 24 24 24 6 0 0 0 5 T | 2 0 0 0 73 13 5 24 24 24 24 0 0 0 0 5scan! |
Dendrogram of similar interfaces ?
matrix formatKA--STYGLASGLA--TGTC--IT------KGRTYANTVTFGPGQCLC L +----------------3tmm_A +----------6 RC--NTFTMA--RAHGNAAC--ST------------------------ L ! +----------------4euw_A ! ----STYGLASGLA--TGTC--IT--RAMTKGRGYANTVTFGPGQCLC L ! +----------------3tq6_B +-11 +------7 RT--NGFTMA--RT--NTAT--SA------------------------ L ! ! +-9 +----------------6t78_A ! ! ! ! RT--NGFTIA--RA--NASG--ST------------------------ L ! ! ! +-----------------------1j47_A ! +-10 RT--NAFTIA--RA--NT----SA------------------------ L ! ! +6edb_B ! ! +--------------1 RC--NGFTMA--RTHTNG----ST------------------------ L ! +----------4 +6t90_L +-12 ! RC--NTFTMA--RAHGNT----SA------------------------ L ! ! +--------------3f27_D ! ! RT--NAFA----RCDTNTRA--ST------------------------ L ! ! +6jrp_D ! ! +---------------2 KC--NT--MAMA--EGSAAC--NT------------------------ L ! ! ! +2lef_A -13 ! +----5 RTTASTYAFALT----PTAT--STRA---------------------- L ! ! ! ! +-------------5jh0_D ! +------8 +-3 ----NAFTIA--RC----SGICST------------------------ L ! ! +-------------1hry_A ! ! --------FTCA----IG----AT------------------------ ! +--------------------6oem_H ! ------YA--------FT----SG------------------------ +----------------------------5ze0_N |
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updated Tue Dec 19 08:12:23 2023